PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G298600.2
Common NameB456_007G298600, LOC105761035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 452aa    MW: 48878.8 Da    PI: 9.9534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G298600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0579101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.007G298600.2  79 FVCEICNKGFQRDQNLQLHRRGH 101
                         89*******************88 PP

2zf-C2H212.30.00052155177123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Gorai.007G298600.2 155 WKCDKCSKKYAVQSDWKAHSKTC 177
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-678101No hitNo description
Gene3DG3DSA:3.30.160.601.5E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PfamPF121717.0E-579101IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355220120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.05E-6150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSNITGDGGG SFSSETHHQE QQQVGNFHGG SNSLLSTNSN GGSTAPPPAK KKRNLPGTPD  60
PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSTEIRKRVY  120
VCPEPSCVHH NPARALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTK  180
EYKCDCGTIF SRRDSFITHR AFCDALTEEN NKASRGLINV GSNLQGQVVA ADQLISAIPV  240
NNNPNTSAIN ISEPFSNDTK SSLQSLNLAA GTMFSNGSSS LFGGTKVTTV PNPSSTSCLQ  300
LNGNSSTLFE GNGGHLFSGS ASMSATALLQ KAAQMGATAS TGSLNSPLMG KSYTTTRIFE  360
QNNAFFKSVE SSTPRTTGLS GFSADTMTVD FLGIGGSRPR NLLEKQHHHH HHHPHQPQQD  420
LEQFGGIGQA RLQGLSHFQQ PAVLEKPMWK V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272661e-138HQ527266.1 Gossypium herbaceum clone NBRI_B_5962 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434142.10.0PREDICTED: protein indeterminate-domain 2-like isoform X2
TrEMBLA0A0D2TNX20.0A0A0D2TNX2_G
STRINGPOPTR_0005s02730.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]